Photosynthetica X:X | DOI: 10.32615/ps.2026.032

Organic compounds as Photosystem II inhibitors and Cu2+ ligands: insights from primary screening

M.S. SHABANOVA1, E.V. ZADNEPROVSKAYA2, S.K. ZHARMUKHAMEDOV3, R.G. VASILOV4, M.S. KARACAN5, S.I. ALLAKHVERDIEV2, 3, 6
1 Institute of Molecular Biology, Ministry of Science and Education of the Republic of Azerbaijan, 11 Izzat Nabiev Street, AZ1073 Baku, Azerbaijan
2 K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Sciences, 35 Botanicheskaya Street, 127276 Moscow, Russia
3 Institute of Basic Biological Problems, Russian Academy of Sciences, 2 Institutskaya Street, 142290 Pushchino, Moscow Region, Russia
4 National Research Center 'Kurchatov Institute', 1 Akademika Kurchatova Square, 123182 Moscow, Russia
5 Department of Chemistry, Science Faculty, Gazi University, Teknikokullar, 06500 Ankara, Turkey
6 Faculty of Engineering and Natural Sciences, Bahçeºehir University, Çirağan Caddesi 4-6 Osmanpaºa Mektebi, 34353 Istanbul, Turkey

The search for novel organic compounds as PSII inhibitors and copper (Cu2+) ligands addresses key agricultural challenges. Three novel compounds were synthesized and evaluated for PSII photochemical activity inhibition and Cu2+-chelating ability. Primary screening was performed by recording effects on minimal and maximal chlorophyll fluorescence levels in isolated thylakoids. Testing employed both direct (thylakoids + Cu2+ + compound) and reverse (thylakoids + compound + Cu2+) addition sequences, with measurements performed under short illumination (<10 s) to avoid photodynamic artifacts. The tested compounds showed no pronounced inhibitory activity toward PSII photochemistry and exhibited no strong Cu-chelating capacity. Nevertheless, these data enable formulation of more stringent structural requirements for candidate molecules and confirm the high information content of the proposed combined screening approach for further biologically active substance design.

Additional key words: chlorophyll fluorescence; copper ions; ligands; novel organic compounds; photosystem II; thylakoids.

Received: August 28, 2026; Revised: September 15, 2026; Accepted: September 16, 2026; Prepublished online: October 2, 2026 

Download citation

References

  1. Arellano J.B., Lázaro J.J., López-Gorgé J., Barón M.: The donor side of Photosystem II as the copper-inhibitory binding site: fluorescence and polarographic studies. - Photosynth. Res. 45: 127-134, 1995. Go to original source...
  2. Arellano J.B., Schröder W.P., Sandmann G. et al.: Removal of nuclear contaminants and of non-specifically photosystem II-bound copper from photosystem II preparations. - Physiol. Plantarum 91: 369-374, 1994. Go to original source...
  3. Barón M., Arellano J.B., Gorgé J.L.: Copper and photosystem II: a controversial relationship. - Physiol. Plantarum 94: 174-180, 1995. Go to original source...
  4. Battaglina B., Grinzato A., Pagliano C.: Binding properties of photosynthetic herbicides with the QB site of the D1 protein in plant Photosystem II: a combined functional and molecular docking study. - Plants-Basel 10: 1501, 2021. Go to original source...
  5. Boucher N., Carpentier R.: Hg2+, Cu2+, and Pb2+-induced changes in Photosystem II photochemical yield and energy storage in isolated thylakoid membranes: a study using simultaneous fluorescence and photoacoustic measurements. - Photosynth. Res. 59: 167-174, 1999. Go to original source...
  6. Æendiæ M., Deeth R.J., Meetsma A. et al.: Chelating properties of EDTA-type ligands containing six-membered backbone ring toward copper ion: Structure, EPR and TD-DFT evaluation. - Polyhedron 124: 215-228, 2017. Go to original source...
  7. Dewez D., Boucher N., Bellemare F., Popovic R.: Use of different fluorometric systems in the determination of fluorescence parameters from spinach thylakoid membranes being exposed to atrazine and copper. - Toxicol. Environ. Chem. 89: 655-664, 2007. Go to original source...
  8. Dhir B., Sharmila P., Saradhi P.P.: Photosynthetic performance of Salvinia natans exposed to chromium and zinc rich wastewater. - Braz. J. Plant Physiol. 20: 61-70, 2008. Go to original source...
  9. Fedtke C.: Biochemistry and Physiology of Herbicide Action. Pp. 202. Springer-Verlag, Berlin-Heidelberg-New York 1982. Go to original source...
  10. Garab G.: Revisiting the QA model of chlorophyll-a fluorescence induction: new perspectives to monitor the photochemical activity and structural dynamics of photosystem II. - Photosynth. Res. 163: 54, 2025. Go to original source...
  11. Guidi L., Lo Piccolo E., Landi M.: Chlorophyll fluorescence, photoinhibition and abiotic stress: does it make any difference the fact to be a C3 or C4 species? - Front. Plant Sci. 10: 174, 2019. Go to original source...
  12. Hess F.D.: Light-dependent herbicides: an overview. - Weed Sci. 48: 160-170, 2000. Go to original source...
  13. Hsu B.-D., Lee J.-Y.: Toxic effects of copper on Photosystem II of spinach chloroplasts. - Plant Physiol. 87: 116-119, 1988. Go to original source...
  14. Jegerschöld C., Arellano J.B., Schröder W.P. et al.: Copper(II) inhibition of electron transfer through photosystem II studied by EPR spectroscopy. - Biochemistry 34: 12747-12754, 1995. Go to original source...
  15. Jiao Q., Hu X.: Recent advances and emerging trends in chlorophyll fluorescence parameter Fv/Fm. - Phyton 94: 2615-2630, 2025. Go to original source...
  16. Kalaji H.M., Schansker G., Brestic M. et al.: Frequently asked questions about chlorophyll fluorescence, the sequel. - Photosynth. Res. 132: 13-66, 2017. Go to original source...
  17. Khorobrykh S.A., Ivanov B.N.: Oxygen reduction in a plastoquinone pool of isolated pea thylakoids. - Photosynth. Res. 71: 209-219, 2002. Go to original source...
  18. Kirschenbaum L.J., Kustin K.: Kinetics of copper(II)-ethylenediamine complex formation. - J. Chem. Soc. A 5: 684-688, 1970. Go to original source...
  19. Kong L., Price N.M.: Long-term adaptive response of an oceanic diatom to copper deficiency. - Front. Mar. Sci. 9: 975184, 2022. Go to original source...
  20. Lichtenthaler H.K., Buschmann C.: Chlorophylls and carotenoids: measurement and characterization by UV-VIS spectroscopy. -Curr. Protoc. Food Anal. Chem. 1: F4.3.1-F4.3.8., 2001. Go to original source...
  21. Madhupriyaa D., Baskar M., Sherene Jenita Rajammal T. et al.: Efficacy of chelated micronutrients in plant nutrition. - Commun. Soil Sci. Plant Anal. 55: 3609-3637, 2024. Go to original source...
  22. Martell A.E., Motekaitis R.J.: Determination and Use of Stability Constants. Pp. 200. VHC Publishers, New York 1992.
  23. Maxwell K., Johnson G.N.: Chlorophyll fluorescence - a practical guide. - J. Exp. Bot. 51: 659-668, 2000. Go to original source...
  24. Mishra U., Kashyap A.K., Pandey J.: Effects of copper on photopigments and photosystem II activity of cyanophage N-1 resistant mutant. - Environ. Technol. 14: 373-378, 1993. Go to original source...
  25. Mohanty N., Vass I., Demeter S.: Copper toxicity affects Photosystem II electron transport at the secondary quinone acceptor, QB. - Plant Physiol. 90: 175-179, 1989. Go to original source...
  26. Murchie E.H., Lawson T.: Chlorophyll fluorescence analysis: a guide to good practice and understanding some new applications. - J. Exp. Bot. 64: 3983-3998, 2013. Go to original source...
  27. Oliwa P., Orlik M.: Oscillatory chemical reaction as a sensor of Cu(II)-EDTA complex formation and ligand degradation in copper ion-catalyzed oxidation of thiocyanate ions with hydrogen peroxide. - Int. J. Chem. Kinet. 53: 1314-1329, 2021. Go to original source...
  28. Ouzounidou G.: The use of photoacoustic spectroscopy in assessing leaf photosynthesis under copper stress: correlation of energy storage to photosystem II fluorescence parameters and redox change of P700. - Plant Sci. 113: 229-237, 1996. Go to original source...
  29. Pádua M., Cavaco A.M., Aubert S. et al.: Effects of copper on the photosynthesis of intact chloroplasts: interaction with manganese. - Physiol. Plant. 138: 301-311, 2010. Go to original source...
  30. Pätsikkä E., Aro E.-M., Tyystjärvi E.: Increase in the quantum yield of photoinhibition contributes to copper toxicity in vivo. - Plant Physiol. 117: 619-627, 1998. Go to original source...
  31. Pätsikkä E., Aro E.-M., Tyystjärvi E.: Mechanism of copper-enhanced photoinhibition in thylakoid membranes. - Physiol. Plantarum 113: 142-150, 2001. Go to original source...
  32. Pätsikkä E., Kairavuo M., ©er¹en F. et al.: Excess copper predisposes photosystem II to photoinhibition in vivo by outcompeting iron and causing decrease in leaf chlorophyll. -Plant Physiol. 129: 1359-1367, 2002. Go to original source...
  33. Persson I., Lundberg D., Bajnóczi É.G. et al.: EXAFS study on the coordination chemistry of the solvated copper(II) ion in a series of oxygen donor solvents. - Inorg. Chem. 59: 9538-9550, 2020. Go to original source...
  34. Renganathan M., Bose S.: Inhibition of photosystem II activity by Cu++ ion. Choice of buffer and reagent is critical. - Photosynth. Res. 23: 95-99, 1990. Go to original source...
  35. Renger G., Gleiter H.M., Haag E., Reifarth F.: Photosystem II: Thermodynamics and kinetics of electron transport from QA- to QB(QB-) and deleterious effects of copper(II). - Z. Naturforsch. 48c: 234-240, 1993. Go to original source...
  36. Rodionova M.V., Zharmukhamedov S.K., Karacan M.S. et al.: Evaluation of new Cu(II) complexes as a novel class of inhibitors against plant carbonic anhydrase, glutathione reductase, and photosynthetic activity in photosystem II. - Photosynth. Res. 133: 139-153, 2017. Go to original source...
  37. Sajjadi M., Nasrollahzadeh M., Ghafuri H. et al.: Copper tetrazole compounds: structures, properties and applications. -Coordin. Chem. Rev. 504: 215604, 2024. Go to original source...
  38. Schreiber U.: Pulse-Amplitude-Modulation (PAM) fluorometry and saturation pulse method: an overview. - In: Papageorgiou G.C., Govindjee (Eds.): Chlorophyll a Fluorescence. Advances in Photosynthesis and Respiration. Vol. 19. Pp. 279-319. Springer, Dordrecht 2004. Go to original source...
  39. Schroeter A.L., Yang H., James C.D. et al.: A new reaction for improved calibration of EPR rapid-freeze quench times: kinetics of ethylene diamine tetraacetate (EDTA) transfer from calcium(II) to copper(II). - Appl. Magn. Reson. 53: 1195-1210, 2022. Go to original source...
  40. Tischer W., Strotmann H.: Relationship between inhibitor binding by chloroplasts and inhibition of photosynthetic electron transport. - BBA-Bioenergetics 460: 113-125, 1977. Go to original source...
  41. Tosato M., Dalla Tiezza M., May N.V. et al.: Copper coordination chemistry of sulfur pendant cyclen derivatives: an attempt to hinder the reductive-induced demetalation in ⁶⁴/⁶⁷Cu radiopharmaceuticals. - Inorg. Chem. 60: 11530-11547, 2021. Go to original source...
  42. Trebst A.: The topology of the plastoquinone and herbicide binding peptides of photosystem II in the thylakoid membrane. - Z. Naturforsch. 41c: 240-245, 1986. Go to original source...
  43. Trebst A.: The three-dimensional structure of the herbicide binding niche on the reaction center polypeptides of photosystem II. - Z. Naturforsch. 42c: 742-750, 1987. Go to original source...
  44. Tuck D.G.: Direct electrochemical synthesis of inorganic and organometallic compounds. - Pure Appl. Chem. 51: 2005-2018, 1979. Go to original source...
  45. Umurzokov M., Kim D., Kim J.-S. et al.: Discovery of new PSII inhibitors: systematic investigation for herbicidal activity screening, properties, and mode of action. - Pest Manag. Sci. 81: 7219-7231, 2025. Go to original source...
  46. Vavilin D.V., Polynov V.A., Matorin D.N., Venediktov P.S.: Sublethal concentrations of copper stimulate Photosystem II photoinhibition in Chlorella pyrenoidosa. - J. Plant Physiol. 146: 609-614, 1995. Go to original source...
  47. Wang H., Yao Q., Guo Y. et al.: Structure-based ligand design and discovery of novel tenuazonic acid derivatives with high herbicidal activity. - J. Adv. Res. 40: 29-44, 2022. Go to original source...
  48. Yruela I., Pueyo J.J., Alonso P.J., Picorel R.: Photoinhibition of photosystem II from higher plants: Effect of copper inhibition. - J. Biol. Chem. 271: 27408-27415, 1996. Go to original source...
  49. Zharmukhamedov S.K., Shabanova M.S., Rodionova M.V. et al.: Effects of novel photosynthetic inhibitor [CuL2]Br2 complex on Photosystem II activity in spinach. - Cells 11: 2680, 2022. Go to original source...
  50. Zonzin M., Chianese M., Squarcina A. et al.: The chelating abilities of tertiary amines with N-O-donors towards Cu(II) ions and the catalytic properties of the resulting complexes. - Molecules 30: 3419, 2025. Go to original source...